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partnerships may have to file an Administrative Adjustment Request (AAR)
While many are familiar with the historical process of amending returns
the AAR process is much different and deserves a further look
Although changing a return may be needed to correct an error
it also may be needed to accomplish a certain goal
many taxpayers have made legitimate employee retention credit (ERC) claims
Many partnerships will need to file AARs as a result of these claims to reduce wage expense in accordance with the credit
various tax bills may be on the horizon containing legislative changes that could be implemented retroactively
AARs may be required to take advantage of or comply with these proposals
The Bipartisan Budget Act of 2015 (BBA) was implemented to heighten compliance and transparency in the partnership tax space
Generally applying to tax years 2018 onward
unless the taxpayer can elect out of BBA rules
they may need to file an AAR to change a previously filed return
As an overarching rule, eligible partnerships to elect out of BBA must have 100 or fewer partners
if one of these partners happens to be an S corporation
the number of shareholders of that S corporation is included in the partner “count.” If the partnership has a partner listed as an ineligible partner in the below
AARs are filed by the partnership wishing to change a previous tax return
These changes can be categorized as “net positive” adjustments or “net negative” adjustments
or reduce credits (and vice versa for net negative adjustments)
There is a process of grouping and subgrouping changes
and each subgrouping results in either a “net positive” or “net negative” result
net positive and net negative adjustments cannot be netted
An AAR can include both net positive adjustments and net negative adjustments
Net negative adjustments must always be passed out to the partners of the year being changed
the partnership may pay the tax on the net positive adjustments at the entity level
This amount due is called the “imputed underpayment” (IU)
the partnership may elect to “push out” the positive adjustments to the partners of the year being changed
The partnership reports net negative adjustments or pushed-out positive adjustments to the partners using Form 8986 (functioning similarly to a Schedule K-1)
If a partner is itself a pass-through (partnership
it must continue to pass along the net negative adjustments from the lower tier AAR to its owners/beneficiaries and has the option to either push out or pay the IU associated with the net positive adjustments
Certain complicating factors with pass-through partners exist but are outside the scope of this article
Reach out to your advisor for more information
One of the more unique aspects of AARs is their timing and how partners account for adjustments passed out to them
the partners do not amend their returns for the changes
they must recompute their Chapter 1 tax liability for the year being changed using the adjustments
and account for the changes in Chapter 1 tax
as either an increase or decrease to the Chapter 1 tax on their tax return that includes the date that the AAR partnership issued its Form 8986s
a partnership needs to adjust its 2022 tax return (known as the “reviewed year”) to report additional ordinary income
The partnership makes the election to push out the net positive adjustment
it files the AAR and distributes Form 8986 to Partner A
Partner A is an individual filing a calendar year return
Partner A must recompute its 2022 tax return using the adjustments from Form 8986 and compare the adjusted tax to the tax on its original (or previously amended) 2022 tax return
If there is a change to the 2022 Chapter 1 tax
Partner A reports that change as an increase or decrease to its Chapter 1 tax on its 2024 tax return
2024 is the “reporting year,” as it includes the March 2024 date that the Form 8986 was distributed to the partners
A reduction in tax from an AAR cannot reduce the reporting year Chapter 1 tax below zero
which may result in a portion of the tax benefit from an AAR being permanently lost under existing rules
The BBA regime only applies to Chapter 1 taxes (the most common example being income tax)
etc.) must be adjusted to include adjustments made by the AAR but are not calculated or paid through the AAR or BBA examination process
Deciding whether to push out the net positive adjustments or to pay an imputed underpayment is the first step in preparing an AAR
Not only are there different forms to fill out and calculations to complete
but there are also differences in potential tax due
pushing out all adjustments is the favorable option
the following discussion weighs the pros and cons of each option
if there are any net negative adjustments after the grouping process
the taxpayer must push out the net negative adjustment(s) to the partners
Even if there are nine net positive adjustments and one net negative adjustment
the partners must receive a Form 8986 with their portion of the one net negative adjustment
it cannot use the negative adjustments as part of the tax calculation
and thus it may be more tax efficient to push out the positive adjustments to the partners so that the negative adjustments may help reduce the tax paid overall to the IRS
one benefit of paying the IU at the partnership level is that it avoids the partners having to report the adjustments and saves compliance costs
This benefit does not exist if the partners are allocated negative adjustments and still have to recompute their reviewed year tax liabilities and report the change on the reporting year return
partners may still have to amend their state income tax returns if the states do not have a similar process as the BBA process
IUs are taxed at the highest current marginal tax rate (37% tax rate)
This is regardless of the tax classification of the partners
and if the change would have otherwise increased income and tax at the partner level
positive adjustments that can impact the IU calculation can also include changes to an asset or liability balance on the partnership’s tax books and may be taxed at 37% (even though it could simply be a change in a balance sheet item that wouldn’t have impacted taxable income)
the “preferential” capital gains rate that individual partners may benefit from is disregarded
a “modification” process is possible in limited situations to adjust the 37% rate
This modification process can be time-consuming and complicated
especially if there are multiple tiers of pass-through entities in the ownership chain
A push-out election would allow the partner to calculate the change in tax due using their individual tax situation
if they would have been afforded a 20% capital gains rate on their Form 1040 for the additional income
the 20% rate would apply when determining the change in tax for their Form 8978
that would offset an increase to income from Form 8986
Section 199A is a deduction put in place by the Tax Cuts and Jobs Act of 2017 (TCJA) to benefit individual and trust taxpayers who are allocated pass-through income
if there is an increase in ordinary income
there is also an increase in §199A income reported to partners
This then provides the opportunity for a higher deduction at the partner level
The same mechanics would be possible with the push-out election
but by paying an IU instead the benefit is lost
There may be changes that directly result from the “core” adjustment in the AAR
an increase in ordinary income may also affect excess taxable income (ETI) calculated as part of the §163(j) interest limitation within the partnership return
Each change would be listed as a separate subgrouping for the IU
The taxpayer is taxed twice for effectively the same change
it may be possible to treat certain adjustments as zero for the IU calculation if one adjustment is reflected in one or more other partnership adjustments (anti-duplication provisions)
Even though partners receiving a Form 8986 will account for changes later than the partnership would pay the IU
this does not necessarily mean interest has to accrue on the changes for a longer period of time
the partner does not have to wait to pay the additional tax due with the reporting year return but can prepay the additional tax and thus “cut off” the interest accrual on AAR changes
Let’s say the partnership is adjusting a 2021 tax return via AAR
both Partner A and Partner B each owned 50% of the partnership
the partnership realizes that an AAR should be filed for 2021
Partner B transferred its entire interest to Partner C
the Forms 8986 are sent to the partners that were present in the reviewed year
The changes are also allocated according to the operating agreement as in effect for the reviewed year
Partner A and Partner B would receive 50% of the changes on Forms 8986
to be accounted for on their 2024 tax returns via Form 8978
If the partnership instead chooses to pay the IU
the “economic burden” of 50% of the IU payment is felt by Partner C
there is a grouping process that the changes within an AAR must go through
The result of this grouping process can cause some unusual results if paying the IU:
AARs can often feel like a burdensome process, and it can take time to complete them correctly. However, with ERC and upcoming possible legislative changes, there may be more and more reasons to file AARs in the coming years. Our knowledgeable tax team can help you through the whole AAR process and answer any questions you may have about your options
please reach out to a professional at Forvis Mazars
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which experts believe dates back to around 2000 BCE
was at first thought to be a row of post holes
excavation leader Andreas Bo Nielsen and Vesthimmerlands Museum curator Sidsel Wåhlin soon recognized its true importance
Experts have found similar wooden circles in Britain
These structures are often linked to sun worship and agricultural rituals
Experts still argue about its exact purpose
The Danish woodhenge seems to align with Stonehenge and the nearby Woodhenge
This hints that Neolithic communities across Europe might have shared religious or cultural beliefs
Wåhlin said this find shows a strong connection to British henges
She added that researchers are now looking to see if there’s an inner circle inside the structure
The settlement included a chieftain’s grave and a bronze sword
which also shows the area was important to ancient people
Experts are now conducting a sampling exercise to study the wood and look for “ritual deposits,” such as flint arrowheads and daggers
they could tell them a lot about the people who built the structure and what they believed
Archaeologists have found similar wooden circles on Bornholm
Wåhlin said that the Aars structure is “the first one of this larger type that we can investigate.”
Studies indicate that Britain saw a big demographic shift around the time people built Stonehenge
after groups migrated from Central Europe and the Steppes
Some experts think that buildings like Stonehenge and its newly found Danish counterpart might have helped bring early farming communities together and strengthen shared beliefs
Researchers plan to analyze DNA from wood pieces found at the location to examine possible genetic connections between early populations in Denmark
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Our latest Archinect Studio Pin-Ups takes a look at three studios at Archinect Partner School USC School of Architecture
offered as part of their one-year Master of Advanced Architectural Research Studies (M.AARS) postgraduate program
The results showcase the greater need for deep sustainability
and more inclusive and democratic economic systems
A report was produced as part of one studio
and students learning under Sulzer's Spring 2024 offering collectively designed a 1-1 intervention using the adaptive p/re-use design ideas they produced in the previous term
*Are you an instructor or current architecture student participating in an exciting studio? We are accepting submissions for our Archinect Studio Pin-Ups series. Reach out to us here for a chance to be featured
Project One: 'Alleys for All' by Hunter Barnett
Description: "As one of the city’s — and nation’s — densest occupied neighborhoods
Koreatown lacks amenities and usable public spaces to adequately accommodate its population
Koreatown features an abundance of underutilized
‘Alleys for All’ attempts to create a framework that enables both the city and the adjacent property owners to transform these alleys into accessible
multi-functional public and community spaces
Bolstering both private and public interests
the project envisions designing open structures as public infrastructure (and public investments)
allow the community to use the alleys as shaded public space or gardens
and the property owners to attach commercial spaces
The structures’ modular and open design is further geared towards collecting water and accommodating energy infrastructure such as solar panels that could serve the whole residential block."
Description: "'Revitalizing Wilshire' addresses the lack of activity along Koreatown’s once lustrous Wilshire corridor
Although many unoccupied or underutilized spaces hide in plain sight K-Town’s Wilshire Boulevard has a rather high rate of vacancy
dozens of unoccupied buildings on and around Wilshire are either slated to be demolished
Given that many of these soon-to-be-demolished buildings possess diverse materiality and other intriguing bits of character
'Revitalizing Wilshire' looks to reusing and recontextualize these ‘demolition’ elements on selected buildings and junctions along the boulevard
creating a series of architectural palimpsests that exalt the rich character of K-Town’s built environment
the junctions and buildings will be transformed and adapted to provide the community with four distinct yet equally crucial programs
Managed and operated by a '4-in-1 Non-Profit' structure owned by community members
the reactivated and revitalized structures will accordingly offer affordable retail space
Project One: 'Zoup(ing) LA' by Joshua Ryan
Description: "Addressing the affordable housing and commercial real estate crisis
'Zoup(ing) LA' proposes a change in state and local zoning laws that would allow more flexible and comprehensive ways to make use of gaps
or left over spaces within the urban fabric
Combining the words Zone (specific purpose) and Soup (blend)
the term ‘Zoup’ is defined as the opposite of a zone; the act or process of blending urban infill
and live/work opportunities into a comprehensive urban fabric
A set of new Zoup policies envision a different take on how to produce housing and the urban fabric: unlocking underutilized land
tax incentives for non-speculative co-operative housing
flexibility for previously separated uses to enable a blend of live/work/production/commercial setups
allowing for incremental construction and planning
and implementing incentives for using repurposed and recycled materials
Applying these policies in the neighborhood of Venice
the Zoup(ing) LA proposes a construction co-operative which produces an architectural kit of parts that can flexibly and adaptively fill in existing
underutilized parcels with affordable housing
Project Two: 'From Forest to Framework' by Ellie Selzer
Description: "'Forest to Framework' seeks to re-frame the framework of sustainably harvested mass timber products and show how they can be utilized in design practices to maximize flexibility
It is vital that timber products used in the construction industry are sourced from sustainable certified forest lands to ensure that deforestation of green reserves is mitigated
The existing supply chain is not vertically integrated
and it follows the cradle-to-grave pipeline
where building materials most likely end up in landfills following demolition
The industry should therefore introduce a closed-loop product life cycle system using the cradle-to-cradle concepts introduced by architect William McDonough
The main priorities within this system are to ensure the increase in sustainable land management practices
to grow the demand for sustainably harvested and produced mass timber products
and to create deconstruction and reuse toolkits that can be adopted into standard design and construction practices
Applying this framework to an affordable housing cooperative located in Venice Beach
this system of flexible and deconstructable mass timber members creates a community of spaces for users to grow their own nutrients
as well as their own houses within a diverse community."
Project One: 'Open Source Housing' by Boyuan Wu
Description: "'Open Source Housing' proposes a transformative model for affordable and sustainable housing delivery
Inspired by existing models of open-source design and production — such as WikiHouse — Open-Source Housing goes beyond offering an open
decentralized process: it aims at integrating its open-source production tool kit into an incremental
and radically circular housing delivery scheme
Using the Community Land Trust (CLT) and Limited Equity Co-operative (LEC) models
Open Source Housing not only establishes a CLT to extract land from speculation and lease it back to its trust members at an affordable price
It also establishes a LEC that integrates all produced and used materials into a leasing system
where the building materials are considered part of a revolving pool of resources that will return to the LEC after disassembly to be reused or recycled
Open Source Housing will open up possibilities for a diversity of owners
and inhabitants to participate in the production of a multitude of ecological and affordable housing solutions applied at different scales and adapted to various contexts."
Description: "'Practopia' proposes a concept of urban transformation that is both pragmatic and reminiscent of utopian ideas of collective living
Practopia seeks to introduce new affordable multifamily housing
as well as micro-commercial programs to foster a more resilient
Building on the hybrid ownership structure of the Community Land Trust (CLT) model
Practopia envisions a framework for participation
as well as non-speculative housing options
Practopia itself is a hybrid: creating pragmatic improvements for inhabitants and owners who join the CLT and advocating for utopian ideas for collective living at the same time
and community-centric future of a Koreatown block
Description: "'Food-Play-Learn-Recycle' is the result of applying the notion of Adaptive R/Re-use into action through a 1-1 scale design-build project within the neighborhood of Koreatown
Students were tasked to design a project built with reused materials and able to be disassembled
as well as be adapted for other potential uses
No new building materials were purchased: they were scavenged on campus
and collected within the neighborhood of Koreatown
Based on the resulting inventory and developed digital library of reclaimed materials
students engaged in a collective design process to develop a 1-1 intervention
The resulting ‘Food-Play-Learn-Recycle’ pavilion addressed three major neighborhood challenges: a lack of affordable and healthy food
The pavilion was installed in front of — and in collaboration with — KYCC
The students developed a ‘waste for food’ concept where local youth was encouraged to deposit recyclable materials
while using the possibilities to play chess
and is now waiting for a future use and application yet to be determined."
Studio Instructors: Sascha Delz and Julia Sulzer
Coordinator M.AARS City Design + Housing: Sascha Delz
Learn more about USC School of Architecture and past editorial coverage by exploring their Archinect School Profile
Josh Niland
Josh Niland is a Connecticut-based writer and editor. He studied philosophy at Boston University and worked briefly in the museum field and as a substitute teacher before joining Archinect. He has experience in the newsrooms of various cultural outlets and has published writing ...
Alexander Walter
Alexander Walter grew up in East Germany with plenty of Bratwurst. He studied Architecture and Media Design at Bauhaus-Universität Weimar, Germany, and participated in foreign exchange programs with Washington-Alexandria Architecture Consortium in Alexandria, Virginia and Waseda University in ...
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Archaeologists in Denmark have uncovered the “Danish Stonehenge” in what has been called a “once in a lifetime find”
The discovery of a circular formation of wooden piles date back to around 2,000 BC and Danish archeologists say they have a “strong connection” to the famous prehistoric Stonehenge structure in the UK
The 4,000-year-old 45 neolithic-era wooden pieces
arranged in a 100-foot-diameter circle and around 2 metres apart
were found accidentally during work on a housing estate in the town of Aars
conservationist at the Vesthimmerland museum in Aars
“It is a once in a lifetime find” and added that the circle “points to a strong connection with the British henge world”
The two circular structures at Stonehenge – which feature a small circle surrounded in a horseshoe shape by a larger one – were thought to have been erected sometime between 3100 BC and 1600 BC
work is now being undertaken to establish whether a smaller inner circle exists in a similar fashion
“When I and my colleague opened a new section of the excavation the expected house and some fence quickly turned out to be the entrance area of a very well planned
some timber circles involved in the practice of worshipping the sun have been found on the Danish island of Bornholm
the recent discovery is “the first one of this larger type that we can properly investigate”
Before the discovery of the 45 wooden pieces
archaeologists uncovered an early Bronze Age settlement
In the settlement was a chieftain’s grave and a bronze sword
Moon filmed in incredible detail by lunar lander spacecraft
Space discovery shows the pyramids were built using ingenious method
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Danish archeologists have uncovered a 4,000-year-old circle of wooden piles that they say could be linked to Britain's world-renowned Stonehenge
in a circle with a diameter of about 30 meters (100 feet)
were found during work on a housing estate in the northwestern town of Aars
The circle "points to a strong connection with the British henge world," she added
The two circles of stones at Stonehenge in southern England are believed to have been erected between 3100 BC and 1600 BC
The Danish archeologists are now trying to find if there is an inner circle at the Aars site
have been found on the Danish island of Bornholm
She added that the circle in Aars was "the first one of this larger type that we can properly investigate"
Archeologists first found an early Bronze Age (1700-1500 BC) settlement at the building site that included a chieftains grave and a bronze sword
"When I and my colleague opened a new section of the excavation the expected house and some fence quickly turned out to be the entrance area of a very well planned
The wooden circle is estimated to date from about 2000 BC but Wahlin said the team had started detailed work on Monday to definitively identify its age and function
The archeologists are now looking for "ritual deposits" such as flint arrowheads and daggers as part of a major sampling exercise at the site
Wahlin said the next searches would seek to find if there were links between the region and other peoples
She said the influence of other regions could be seen in the pottery and graves that had been found
© Agence France-Presse
A recent study by RP Legal Group identified Louisiana as the US state with the highest rate of medical malpractice over the last decade
while Hawaii ranked as the state with the lowest rate
based on data from the National Practitioner Databank (NPDB) between 2013 and 2023
analyzed adverse action reports (AARs) against healthcare providers across the US
Louisiana topped the list with 28.55 AARs per 100,000 people
The year 2015 saw the highest number of cases in the state
Louisiana experienced an 18 percent decrease in reports over the period analyzed
Wyoming followed closely with a rate of 26.18 per 100,000 people
Although Wyoming’s AAR count had declined by 29 percent since 2013
2023 marked the lowest number of reports in Wyoming
Colorado ranked third with a rate of 25.6 AARs per 100,000 people
seeing a 15 percent increase in the number of reports over the decade
Colorado reached its peak in 2018 with 2,022 reports
experienced a significant decrease of 42 percent in AARs between 2013 and 2023
despite having a rate of 22.92 per 100,000 people
Rounding out the top five states was Oklahoma
with an average annual rate of 22.50 AARs per 100,000 people
Oklahoma saw the most substantial decline among the top states
with a 77 percent drop in reports filed over the decade
Hawaii had the lowest rate of medical malpractice
The state averaged 62 reports annually and saw a 39 percent decline since 2013
New York reported a rate of 5.46 per 100,000 people but experienced a 52 percent decrease in reports
Commenting on these findings, Robert Rikard from RP Legal Group emphasized the importance of addressing systemic issues within healthcare
there were 26,805 reports filed throughout America
with Texas having the highest number of reports at 2,870
These figures indicate an issue within healthcare systems and protocols that must be revisited to prevent malpractice.”
Rikard pointed out that medical malpractice could arise from various factors
stressing that “healthcare workers must ensure they have thorough training and stay up to date with advances in the healthcare system to reduce potential malpractice.”
The analysis highlighted the importance of consistent training and oversight in the healthcare system to address and prevent cases of malpractice that could have severe consequences for patients
A union grievance protesting the publication of “Adverse Action Reports” (AAR) by the Department of Veterans Affairs (VA) resulted in an arbitration decision directing VA to remove AARs from its website and to cease and desist the publication of AARs
the VA has published AARs on its website that provide visitors to the website with information regarding disciplinary actions taken against VA employees
The American Federation of Government Employees (AFGE) filed a grievance
alleging that the compilation and publication of the information contained in the AARs violated the Privacy Act
The arbitrator’s decision follows the evolution of the VA’s disciplinary tracking system used to share information internally about employee discipline
which was initially created as an ad hoc “computerized information sharing site” that received inputs from all VA offices on every instance of employee discipline
Offices were expected to report extensive information about the nature and timing of the disciplinary action
When the decision was made to publish AARs
the now-defunct Office of Accountability Review (OAR) “scrubbed” the tracker of some information
When OAR was replaced by the Office of Accountability and Whistleblower Protection (OAWP)
the tracker was replaced with a new database called “HRSmart.” HRSmart’s database also tracked Employee Identification Numbers (EIN)
in addition to the previously tracked information
though those EINs were not published in the AAR
Concerns regarding the ease with which employees could be identified proliferated despite purported efforts by OAWP to sanitize the disciplinary records
and testimony by OAWP officials at the arbitration revealed that the AAR gave rise to employee privacy complaints and had a negative effect on employee morale.
VA argued that publication of the AAR could not violate the Privacy Act because the information contained within the AAR did not constitute “records” within the meaning of the Privacy Act
The arbitrator concluded that Tobey suggested that the disputed information was appropriately viewed as a Privacy Act “record” because it was information about “not just the issuance of discipline
but about specific instances of discipline issued to particular individuals who
in some instances can be particularly identified by the published information notwithstanding the Agency’s effort to scrub or sanitize the data set.”
The arbitrator therefore found that VA’s publication of the AAR was a disclosure of Privacy Act “records” that were “about” particular employees
and that his finding was consistent with a previous VA General Counsel Advisory Opinion from March 14
That Advisory Opinion held that “Under the Privacy Act
on its own initiative and without prior written consent
disclose information about disciplinary actions against identified management officials…Information about disciplinary actions cannot contain details which would allow employees
including employees at the involved facility
to identify the disciplined employee.” The arbitrator noted that the VA “flagrantly disregarded the Agency’s own General Counsel’s advisory opinion and the rights of those employees whose particular work circumstances allowed them particularly to be identified.”
Although the VA’s “purpose” in publication of the AARs was to “rehabilitate its public image” rather than to disclose the identity of any particular employee
the arbitrator found that this goal “in no way detracts from the fact that the disclosures themselves were willful and intentional
taken with a known risk that publication of such information could lead to privacy violations as recognized by the Agency’s witness and its own General Counsel’s advisory opinion.”
In addition to finding that publication of the AARs violated the Privacy Act
the arbitrator also found that the VA violated two separate articles of its collective bargaining agreement with the union
The arbitrator also found that unilateral publication of the AARs constituted an unfair labor practice because the VA had a statutory duty under 5 U.S.C
§ 7116(a)(1) and (5) to “bargain with the Union over changes in the terms and conditions of employment that are more than de minimis.”
the arbitrator directed the VA to “remove the AARs from its website and cease and desist publishing the AARs in that or like manner until such time as it achieves compliance with the Privacy Act
Read the full opinion: FMCS Case No. 17-54365
This case law update was written by Conor D. Dirks, Associate Attorney, Shaw Bransford & Roth, PC
has provided superior representation on a wide range of federal employment law issues
from representing federal employees nationwide in administrative investigations
to handling security clearance adjudications and employment discrimination cases
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Metrics details
Protein translation is the ultimate paradigm for sequence-defined polymer synthesis
To introduce non-canonical monomers into the genetic code of living organisms
pairs of biomolecules known as aminoacyl-tRNA synthetases (aaRSs) and transfer RNAs (tRNAs) are required
The discovery and engineering of five such pairs
that do not interfere with each other or the aaRS–tRNA pairs of a bacterial host
sets the stage for highly modified genetically encoded biopolymers
Prices may be subject to local taxes which are calculated during checkout
A review about sequence-defined synthesis of artificial polymers in cells
Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA
This article presents the discovery and characterization of the PylRS–tRNAPyl pair
Mutually orthogonal pyrrolysyl-tRNA synthetase/tRNA pairs
This article describes the generation of mutually orthogonal PylRS–tRNAPyl pairs
Engineered triply orthogonal pyrrolysyl–tRNA synthetase/tRNA pairs enable the genetic encoding of three distinct non-canonical amino acids
This article reports the engineering of triply orthogonal PylRS–tRNAPyl pairs used to incorporate three distinct ncMs into a protein
A 68-codon genetic code to incorporate four distinct non-canonical amino acids enabled by automated orthogonal mRNA design
This article describes the genetic encoding of four distinct ncMs into a protein
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Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations
This is a summary of: Beattie, A. T. et al. Quintuply orthogonal pyrrolysyl-tRNA synthetase/tRNAPyl pairs Nat. Chem. https://doi.org/10.1038/s41557-023-01232-y (2023)
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Volume 10 - 2022 | https://doi.org/10.3389/fbioe.2022.918659
This article is part of the Research TopicCell-Free Synthetic Biology, Volume IIView all 16 articles
Cell-free biology is increasingly utilized for engineering biological systems
and circumventing many of the complications associated with cells
The central dogma describes the information flow in biology consisting of transcription and translation steps to decode genetic information
Aminoacyl tRNA synthetases (AARSs) and tRNAs are key components involved in translation and thus protein synthesis
This review provides information on AARSs and tRNA biochemistry
summarizes progress in cell-free engineering of tRNAs and AARSs
and discusses prospects and challenges lying ahead in cell-free engineering
Initially, cell-free systems were prepared using cell lysates, where cells were lysed, chromosomal DNA and cell membrane debris were removed, and the rest of the cellular contents were used for studies. Lysate-based systems suffered from batch-to-batch variation, hampering the ability to obtain consistent results (Hunter et al., 2018; Dopp, Jo, and Reuel, 2019)
These systems also often contained inhibitory factors
and in the context of molecular engineering of fundamental importance
lysates are complex and their composition is unknown
and the focus of this review lies on aminoacyl tRNA synthetase and tRNA biochemistry and engineering in the context of cell-free systems
Genetic information in biology is decoded through transcription and translation steps to result in RNA and proteins
Scientific activities in the last century helped us reach our current understanding of the steps involved in processing genetic material
a brief history of the discovery of key steps and components involved in the central dogma is discussed
the scientific community believed that proteins should be the genetic material as they are structurally diverse being made from 20 different building blocks
nucleic acids have only 4 bases as their building blocks and were thus thought less likely to be the carrier of genetic information
The genetic code linkage between nucleic acids and proteins was discovered by Marshall Nirenberg in 1961 (Nirenberg and Matthaei, 1961)
Nirenberg’s work showed that codon triplets of RNA gave rise to amino acid sequences during protein synthesis
This work laid the foundation for establishing the codon–amino acid relationship in protein synthesis
which is referred to as the second genetic code
Many components are required to implement the genetic code and key components are DNA
Genetic code implementation is a result of specific interactions between these components
There is a nucleotide-based world (DNA and RNA) and an amino acid–based world (proteins)
DNA replication duplicates and maintains the genetic code
The transcription step results in single-stranded RNA molecules using DNA as its template and the translation step uses RNA as its template to synthesize protein peptides and completes the decoding of genetic information
The translation process bridges the nucleotide world and the amino acid world
Now we know that AARSs are the enzymes responsible for charging cognate amino acid onto its cognate tRNA
The fidelity of the translation process is hugely dependent on the specificity of the AARS enzymes
These enzymes have a direct influence on the protein synthesis process
segregating proteogenic amino acids from non-proteogenic amino acids
The next section contains details on tRNAs and AARSs focusing on synthesis
This section focuses on providing basic information on the structure
and the role of tRNA and AARS in the protein synthesis process
coli AARSs and tRNAs unless otherwise indicated
Structure of tRNA presented in the 2-D cloverleaf model (left) and in the 3-D “L” shaped model (right)
The tRNA consists of acceptor stem (green)
The number of tRNAs present in an organism is dependent on codon usage
there are 64 (43) different codon sequences available
and UGA) are called stop codons and do not have a corresponding tRNA
These 61 tRNAs are shared amongst 20 amino acids
The number of tRNA acceptors for each amino acid is not the same and varies across amino acids
there exists only one tRNA for the amino acid methionine with codon AUG
multiple tRNAs can carry the same amino acid at their 3’ end and such tRNA groups are referred to as isoacceptors
there are six isoacceptor tRNAs for the amino acid lysine with codons UUA
AARS binds to the ATP and amino acid to form an aminoacyl intermediate
the amino acid is transferred onto tRNA resulting in activated tRNA being ready for the translation process
AARS becomes free for the next cycle of aminoacylation
(B) Depicting the molecular structure of terminal adenosine of tRNA and the attack of the hydroxyl group (2′/3′) in AA-AMP intermediates
ATP and amino acid bind to the AARS enzyme triggering a nucleophilic attack of the amino acid carboxyl oxygen to the α-phosphate group of ATP
This results in amino acid adenylate intermediate (AA–AMP) and release of pyrophosphate (PPi)
one of the hydroxyl groups of adenosine (3′-OH/2′-OH) in tRNA attacks the carboxyl carbon of AA–AMP intermediate resulting in the transfer of amino acid to tRNA
The amino acids and tRNAs are linked by an ester bond
which are released from the catalytic site of the enzyme and the AARS enzyme is free for the next cycle
tRNA is not required but some AARSs such as GlnRS
and class I LysRS require tRNA as a prerequisite for amino acid activation
Activated tRNA-AA binds with the elongation factor
and when reaching the ribosome participates in translation
the cognate amino acid is selected by its ability to interact with zinc ions present in the active site whereas non-cognate amino acids fail to do so
List of tRNA identity elements and their location on tRNA for aminoacylation by AARS from E
Identity elements for fMet are provided in italics and bold
AARSs are grouped based on the location of the identity elements present on tRNA regions
The list of AARS under each group and the tRNA bases utilized for recognition are highlighted
Additional discrimination comes from the kinetic aspect of binding to discriminate cognate tRNAs. Aminoacylation with cognate tRNAs is more influenced by Kcat values than KM values (Ebel et al., 1973)
Evolutionary conservation of the identity elements in tRNAs suggests their importance
even though these elements do not directly contribute to protein synthesis
Pauling in 1958, theoretically predicted that amino acid misincorporation during translation should be about 1 in 200 (Pauling, 1958). However, in vivo experiments showed that this error rate is about 1 in 3,000 (Loftfield, and Vanderjagt, 1972)
Aminoacylation by AARS has an error rate of about 1 in 10,000
This led to the suggestion of some editing mechanism being in place to account for these observations
The low error rate for AARSs is due to better recognition of cognate substrates and a proofreading/editing mechanism
This section briefly describes the editing/proofreading mechanism used by AARSs to ensure faithful aminoacylation
de-acylation of cognate amino acid is prevented as it cannot enter the editing site
Evidence for the presence of a separate editing site is seen in 10 AARS from both classes I and II
Editing activity can be divided into pre-transfer editing and post-transfer editing
editing occurs before the amino acid is transferred to tRNA
editing occurs after the amino acid is transferred to tRNA
Most AARSs use one of these editing mechanisms
but some AARS such as LeuRS and ValRS use both mechanisms
Pre-transfer editing occurs after the formation of amino acid adenylate (AA–AMP) but before transfer to tRNA
Pre-transfer editing is seen in both AARS classes
Pre-transfer editing can occur in two methods
AA–AMP is released by the enzyme to the cytosol and the phosphoester bond is spontaneously hydrolyzed
enzymatic hydrolysis of AA–AMP occurs either in the active site or in a separate editing site
thiolated non-proteogenic amino acids such as homocysteine and ornithine are cleared by pre-transfer editing in the active site of the enzyme by MetRS and LysRS
Post-transfer editing occurs after the transfer of amino acid to tRNA and occurs in a separate editing site
This editing involves cleaving the ester bond between amino acid and tRNA
amino acid triggers a conformational change in the 3′ end of tRNA and results in tRNA translocation
Translocation results in an amino acid being in the editing site where it is hydrolyzed
mischarged tRNA is rapidly released and in those cases
enzymes are capable of recapturing these mischarged tRNA for editing
PheRS competes for Tyr-tRNAPhe with EF-TU to recapture and edit the tRNA
The preference for the editing mechanism used is dependent on the rate of amino adenylate hydrolysis and transfer to tRNA
In case of a faster transfer rate to tRNA as in ValRS
both reaction rates are fairly equal and hence both editing mechanisms are used
Editing mechanism for aminoacylation process
Pre-transfer editing occurs before amino acid gets charged onto tRNA
Post-transfer editing occurs after amino acid is charged onto tRNA
Trans editing factors are independent editing proteins involved in hydrolysis of mischarged tRNA
The accuracy of protein synthesis relies on an AARS's ability to recognize cognate amino acids and tRNAs
Kinetic analysis is useful to develop the mechanism of action in the steps involved in aminoacylation
This section provides information about different kinetic approaches used to study tRNA aminoacylation
The parameters widely used to describe the kinetics of AARSs are substrate affinity KM
KM refers to affinity of the enzyme to the substrate
Kcat is the catalytic constant for substrate to product conversion
Kcat/KM is the specificity constant or catalytic efficiency of the enzyme
Steady-state kinetics is useful for initial characterization of the enzyme and to measure kinetic parameters
Since steady-state kinetics are used generally
parameters obtained can be compared across systems
enzyme specificity for cognate and non-cognate amino acids can be measured and compared across AARSs
Steady-state measurements are usually performed with substrate concentrations much higher than enzyme since the assay follows product formation
Minimal material requirements and fast readout make the steady-state approach suitable for initial characterization
The drawback of steady-state kinetics is that elementary reactions cannot be characterized
To determine the rate of the aminoacylation process
ATP pyrophosphate exchange assays and aminoacylation assays are performed under steady-state kinetics
The ATP–PPi exchange assay is based on the amino acid activation step
ATP and amino acids form aminoacyl adenylate intermediate (AA–AMP) with the release of pyrophosphate (PPi)
The radioactive group reacts with AA–AMP resulting in [32P]-ATP
This assay measures the exchange of [32P]-PPi into ATP to provide rate of the activation step
radioactive [32P]-ATP is used for amino acid activation and the rate of ATP consumption is measured using activated charcoal or thin layer chromatography (TLC) plates
KM and Kcat values of amino acids for AARS from E
Unit for Kcat is s−1 unless mentioned otherwise
Pre-steady state kinetics is used to study elementary reaction steps
The pre-steady state kinetic approach is used to study fast reactions
present at an early stage of the interaction
This approach is best for understanding the mechanistic action of interaction
Parameters like individual rate constants of the reactants can be determined using pre-steady state kinetics
substrate-binding order in the active site
and consumption of intermediates can be studied by pre-steady state kinetics
Rapid chemical quench and stopped-flow fluorimetry are generally used to study AARSs
Rapid kinetic approaches were used to mechanistically distinguish the two classes of AARSs
product release of AA-tRNAaa is the rate-limiting step
amino acid activation is the rate-limiting step
Rapid chemical quench is a discontinuous assay providing a direct readout of the rate of the radiolabeled product formed
Stopped-flow fluorimetry is a continuous assay and provides an indirect readout of reaction progress
Progress is dependent on changes in intrinsic tryptophan fluorescence correlated to reaction chemistry
Table 3 contains the half-life of activated tRNA-AA measured in E. coli (Hentzen, Mandel, and Garel, 1972)
The value represents the spontaneous hydrolysis rate of tRNA-AA at neutral or alkaline pH in a high ionic condition at 37°C
the stability of the ester bond depends purely on the amino acid attached to tRNA
Half-life for all amino acids but tryptophan is presented and ranges from 2 to 65 min
TABLE 3. Half-life values of tRNA-AA from E. coli. Values obtained based on ester bond hydrolysis under neutral or alkaline pH in a high ionic medium at 37°C (Hentzen, Mandel, and Garel, 1972)
Orthogonal pairs TyrRS/tRNA-Tyr obtained from archaea Methanococcus jannaschii and pyrrolysyl-(Pyl)RS/tRNA-Pyl from Methanosarcina barkeri are most commonly used for incorporating NC-AAs
The open nature of cell-free protein synthesis (CFPS) provides a higher degree of freedom for structurally and functionally diverse NC-AAs to be incorporated
and cross membrane transport are not constraints for CFPS allowing incorporation of many different NC-AAs
Charging of orthogonal tRNA with NC-AAs is a key step in the translation process and it is usually mediated by AARS enzymes
there are other methods such as the chemoenzymatic method
and ribozyme-based approaches for acylation to charge tRNA with NC-AAs
These synthetic methods are utilized in vitro to generate pre-charged tRNAs with NC-AAs and can be directly supplemented into the cell-free system
Such pre-charged tRNAs are useful to learn more about single turnover translation
The key advantage of chemical acylation methods is that structurally and chemically diverse groups can be added onto tRNAs without the need to re-engineer AARS
this approach does suffer from low efficiency and therefore yield
they will compete with the same codon and lower the incorporation of NC-AAs
the relative ratio of NC-AA to cognate amino acid should be tightly controlled to favor NC-AA incorporation
However site-specific incorporation requires a faster and more accurate aminoacylation reaction between NC-AA and tRNA
there is a need for a better strategy to identify mutants with better incorporation efficiency
Many functional groups can be ligated to tRNA with this approach
but it is cumbersome due to the laborious chemical process involved in the preparation of acylated nucleotides
Different aminoacylation methods used for NC-AA incorporation
Cell-free transcription and translation systems have enormous potential to overcome the limits of cell-based protein synthesis and could become the next generation platform for protein engineering that can go well beyond the scope of what could be accomplished in a cellular environment
This work was supported by the European Research Council under the European Union’s Horizon 2020 research and innovation program Grant 723106 and a Swiss National Science Foundation grant (182019)
Open access funding provided by École Polytechnique Fédérale de Lausanne
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations
Any product that may be evaluated in this article
or claim that may be made by its manufacturer
is not guaranteed or endorsed by the publisher
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Citation: Ganesh RB and Maerkl SJ (2022) Biochemistry of Aminoacyl tRNA Synthetase and tRNAs and Their Engineering for Cell-Free and Synthetic Cell Applications
Received: 12 April 2022; Accepted: 18 May 2022;Published: 01 July 2022
Copyright © 2022 Ganesh and Maerkl. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use
distribution or reproduction in other forums is permitted
provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited
in accordance with accepted academic practice
distribution or reproduction is permitted which does not comply with these terms
*Correspondence: Sebastian J. Maerkl, c2ViYXN0aWFuLm1hZXJrbEBlcGZsLmNo
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Danish archaeologists have discovered a 4,000-year-old wooden circle in the town of Aars, in northwestern Denmark, which might be related to Britain’s Stonehenge.
Archaeologists made this discovery during construction work on a housing estate.
As per GB News, experts believe the ancient structure could provide evidence of a historical link between Neolithic people in Denmark and Britain.
The discovery includes 45 wooden pieces from the Neolithic era, arranged in a circle with a diameter of about 30 meters.
The wooden pieces create a slightly oval-shaped structure, with each piece placed about two meters apart.
Sidsel Wahlin, conservationist at the town's Vesthimmerland museum, said "It is a once in a lifetime find.”
She added that the circle "points to a strong connection with the British henge world."
Archaeologists are now examining the site to see if it has an inner circle, like the concentric design of Stonehenge.
Experts mentioned that similar wooden circles, believed to be linked to sun worship, have been found on the Danish island of Bornholm.
Wahlin pointed out that the Aars circle is the first large one that can be properly studied.
The Danish wooden circle is estimated to be from around 2000 BC.
Moreover, the timing suggest that the wooden circle and Stonehenge might have been constructed around the same historical period.
Volume 15 - 2024 | https://doi.org/10.3389/fneur.2024.1376643
This article is part of the Research TopicConsanguinity and Rare Genetic Neurological DiseasesView all 9 articles
The intricate relationship between seizure control and cognitive impairment remains complex
an intensified form often rooted in genetic factors
is detectable through next-generation sequencing
We present a case involving two sisters with refractory generalized seizures evolving into dysarthria
abnormal electroencephalogram results consistent with epilepsy were noted
Whole Exome Sequencing identified heterozygous variants in the alanyl-tRNA synthetase (AARS) and Calcium Voltage-Gated Channel Subunit Alpha 1 (CACNA1A) genes
Patients A and B exhibited a unique blend of neurological and psychiatric conditions
distinct from common disorders that begin adolescence
Whole Exome Sequencing uncovered an AARS gene and CACNA1A gene
linked to various autosomal dominant phenotypes
coupled with familial reports of migraines and seizures
provides insight into accelerated symptom progression
This study underscores the importance of genetic testing in decoding complex phenotypes and emphasizes the value of documenting family history for anticipating related symptoms and future health risks
Understanding the intricate relationship between genetic factors and channelopathies in epileptic encephalopathy is crucial for precise diagnosis
along with abundant multifocal epileptic activity and generalized activity
Cerebral magnetic resonance image did not show structural lesion
the patient was highly dependent and required assistance with her daily living activities like bathing
(A) Electroencephalogram of patient A with a bipolar montage showed generalized slowness in the background activity
Electroencephalogram showing reported generalized slowness of background activity with abundant multifocal epileptic activity
predominantly affecting the posterior regions
consistent with a non-convulsive status epilepticus
(C) Electroencephalogram in normal conditions showed generalized slowness in the background activity
the patient was dependent and required assistance with her daily living activities like bathing
We conducted a Whole Exome Sequencing (WES) analysis on the peripheral blood samples obtained from both the sisters and their parents to ascertain the genetic condition
The parents were not consanguineous but were born and live in the same rural area
The father had migraine and memory impairment during adolescence
Relatives from the father side have seizures
We used a capture of target regions using probes
followed by next-generation sequencing with Illumina technology
whereas that of the mapped reads was 41,603,016 (99.86%)
We aligned the raw data using the Burrows–Wheeler Aligner software
sorted and merged the data using the Picard tools software
and identified the nucleotide variants (SNV) and insertions or deletions (indel) using GATK
The GRCh37 version of the human genome was taken as reference
(A,B) Cartoon representations illustrate the protein structures of both CACNA1A wild-type (wt) and the R2467P mutant
The structures are color-coded by secondary elements: white represents loops
On the left (blue arrow) is the wt structure
On the right (red arrow) is the R2467P mutant
characterized by the non-polar residue proline
(C,D) Surface representations depict the protein structures of both CACNA1A wild-type (wt) and the R2467P mutant
The structures are color-coded based on electrostatic values: red represents negative values (−10 min)
and blue signifies positive values (10 max)
On the left (within the yellow oval) is the wt structure
On the right (within the green oval) is the R2467P mutant
Note the discernible modification in the electrostatic surface of this Intrinsically Disordered Region (IDR) caused by the mutation
(E) STRING network analysis of CACNA1A reveals a comprehensive interaction network involving proteins associated with its interaction
The connections are highlighted by co-expression (black)
and experimentally determined interactions (pink)
Based on the criteria outlined in the joint consensus of the ACMG (American College of Medical Genetics) and AMP (American Association of Molecular Pathology) for classifying pathogenic variants
we propose reclassifying this variant as a pathogenic Variant
It aligns with characteristics demonstrating supporting pathogenicity (PS1) as CACNA1A is associated with autosomal dominant Developmental and epileptic encephalopathy (OMIM: 617106)
familial hemiplegic with progressive cerebellar ataxia (OMIM: 141500)
Spinocerebellar ataxia (OMIM: 183086) and Lennox–Gastaut syndrome (OMIM: 615369); (PS2) as the mother has one of the variants and the father has the other variant; its low frequency in control databases (PS4)
and moderate evidence of pathogenicity (PM4) based on the conservation of the nucleotide
Common neurological disorders of this age like generalized idiopathic seizures including juvenile myoclonic epilepsy and tonic–clonic seizures on awakening lack of cognitive and psychiatric alterations
This comprehensive exploration provides a foundation for understanding the unique neurologic and psychiatric features observed in our adolescent patients
These healthy females exhibited typical motor and neurological development until age 15
displaying progressive symptoms from seizures to motor and cognitive alterations
Patient B presented additional psychiatric symptoms
we identified 27 nonsense variants of the AARS gene: 16 classified as pathogenic
nine as variants of uncertain significance
These nonsense variants have been associated with conditions such as Charcot–Marie–Tooth disease type 2
Developmental and epileptic encephalopathy type 29
axonal type 2N Charcot–Marie–Tooth disease
The variant most like ours was categorized as pathogenic for Charcot–Marie–Tooth disease type 2
resulting in a p.Y690* mutation (NC_000016.10: 70258139: A > C)
Both of our patients present with a mutation in the AARS gene
but they are the first of their mother’s family side with symptoms suggesting incomplete penetrance and an autosomal dominant inheritance
both patients present with a mutation in the CACNA1A gene
The latter presented with migraines during his teenage years
and four other family members of their father’s family side have reported seizures
Comprehensive whole exome sequencing was performed
thoroughly examining all genes associated with the clinical symptoms and additional genes as specified previously
This led us to identify AARS and CACNA1A as the only genes likely to be implicated in the etiology of the condition
We speculate that having these two mutations could explain the fast progression of symptoms and deterioration
emphasizing the significance of comprehensive family history assessment contributes to a more accurate understanding of genetic conditions and facilitates proactive health management
Our study unravels a complex interplay of genetic factors contributing to a novel phenotype in two adolescent patients with a dual mutation in the AARS and CACNA1A genes
The distinct progression of symptoms from seizures to motor and cognitive alterations
including psychiatric symptoms in Patient B
challenges the conventional understanding of AARS-related phenotypes
The CACNA1A mutation further adds to the complexity
showcasing a broad phenotypic spectrum with significant incomplete penetrance
The familial inheritance of these mutations correlates with an accelerated symptom progression
emphasizing their potential role in the clinical manifestation
We underscore the essential role of genetic testing
highlighting the need for international collaborations to improve healthcare accessibility
and emphasizes the significance of detailed family history documentation for a comprehensive and collaborative approach to genetic research and healthcare
ensuring universal access and proactive management for individuals and families with complex genetic conditions
The datasets presented in this article are not readily available because of ethical and privacy restrictions
Requests to access the datasets should be directed to the corresponding author
The studies involving humans were approved by CEISH Universidad San Francisco de Quito
The studies were conducted in accordance with the local legislation and institutional requirements
Written informed consent for participation in this study was provided by the participants’ legal guardians/next of kin
Written informed consent was obtained from the minor(s)’ legal guardian/next of kin for the publication of any potentially identifiable images or data included in this article
The author(s) declare financial support was received for the research
This work was funded by the Academic Articles Publication Fund of Universidad San Francisco de Quito USFQ
The authors are indebted to the patients and the parents for their willingness to participate in this study
The Supplementary material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fneur.2024.1376643/full#supplementary-material
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Deficient activity of alanyl-tRNA synthetase underlies an autosomal recessive syndrome of progressive microcephaly
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DiCapua D and Hosomichi K (2024) AARS and CACNA1A mutations: diagnostic insights into a case report of uncommon epileptic encephalopathy phenotypes in two siblings
Received: 25 January 2024; Accepted: 04 April 2024; Published: 15 April 2024
Copyright © 2024 Romero, Sáenz, Arias-Almeida, DiCapua and Hosomichi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY)
*Correspondence: Vanessa I. Romero, dnJvbWVyb0B1c2ZxLmVkdS5lYw==
Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations
Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher
94% of researchers rate our articles as excellent or goodLearn more about the work of our research integrity team to safeguard the quality of each article we publish
Programme Director for the MSc Quality and Safety in Healthcare Management
delivered a keynote presentation at the HMI conference titled
“The Irish Safety Culture and After Action Review Experience (iCAARE) study – implications for healthcare managers.” McCarthy is co-investigator of the iCAARE study
which examined the implementation and effect of AARs over a year at one hospital site in Ireland
McCarthy explained that After Action Reviews (AARs) originated in the US military as a method for learning from training missions
This practice has since been adopted by various industries
AARs involve a group reflecting on four key questions:
the Health Service Executive (HSE) in Ireland has integrated AARs into its National Incident Management Framework
The RCSI Graduate School of Healthcare Management
trained approximately 500 healthcare staff as AAR facilitators through in-person simulation-based training between 2018 and 2001
Recognising the need for innovation in learning from patient safety events
AARs were advanced in the Irish Health System before a strong evidence base was established
comprising researchers and knowledge users
Drawing on an iCAARE publication in Safety Science
McCarthy’s presentation focused on enablers and barriers to AARs and identification of behaviour change techniques to support implementation
alongside potential implications for healthcare managers
She shared key enablers to AAR implementation
Key barriers to AAR implementation included:
McCarthy suggested that addressing reinforcement and environmental constraints could help mitigate potential barriers related to emotions and social roles
She also noted strong reinforcement of AARs during the early stages of adoption is crucial
To enhance enablers and overcome barriers, McCarthy emphasized the use of a portable recorded resource of simulated AAR. Developed by the iCAARE research team and available in BMJ Open Quality
four open access videos have been produced
These open access videos are being used widely in the HSE
and other countries to support AAR awareness and training
McCarthy recommended the videos to the audience of healthcare managers
and suggested healthcare managers prioritise AAR awareness and training for staff
and address any practical and emotional barriers to AARs among staff
she recommended to the audience to keep abreast of iCAARE team updates in the coming months
which will feature additional study findings and strategies to support AAR
This implementation science research study was funded by a HRB Applied Partnership Award
with co-funding from the HSE National Quality and Patient Safety Directorate
Dr Natasha Rafter is the iCAARE Principal Investigator
and Ms Lorraine Schwanberg the Lead Knowledge User.
The HMI is the professional body for healthcare managers across all sectors of the health services in Ireland
Its overall aim is the development of standards of management competence and practice
educate and involve members and stakeholders in professional development and networking activities
© Health Management Institute of Ireland (HMI) 2025 | Digital content by The Learning Rooms, Dublin
Our Executive Team and Board of Directors are highly experienced members of the Railroad Industry and bring perspectives from several Class I railroads as well as other transportation and service related fields
he turned a railroad service company with a single backhoe into one of the nation's leading railroad service providers
Our vision is to be the BEST service provider to the railroad and related industries
Our over 50 years in the railroad industry equips us with the experience and knowledge to consistently meet customers' needs
We are on call 24/7 to make sure you get rapid responses to emergencies
Our strategically located field offices enable us to get on site quickly
We excel in developing communication solutions
From engineering highway crossing warning systems to wayside signals
we can provide turnkey services at any level
These crews and their equipment are formed from the combined resources of multiple companies to provide a concentrated
high-quality and cost-effective inventory management and point-of-use delivery
Our 19 short line railroads operate in 11 states serving customers with a wide variety of commodities
We have 30+ years of experience providing safe and reliable transportation
We provide railroad operational support to a wide variety of industrial facilities that ship via rail
Our services can be greatly customized to suit our customers’ needs
We stand ready to provide secure material warehousing and transloading services to customers in locations with or without railroad access
With year-round excursions in Kentucky’s beautiful countryside
this passenger dining experience offers the perfect pairing of delicious food and delightful scenery
Keep up to date with the latest activity from R
Corman and follow us on Facebook and Twitter
Find out how to bid on funded projects for R
To request wire line or pipe line installation
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42 railroaders participated in an American Association of Railroad Superintendents (AARS) training hosted by our company
It was two days full of highly technical training in Train Accident Prevention and Investigation
the American Association of Railroad Superintendents has served as networking
and development group for railroad operations leadership and management of Class I
and passenger railroads in North America.
Railroaders from different parts of the country
ranging from Class I and regionals to short lines and transit railroads
The sessions were led by experienced railroaders Bruce Rose and Jimmy Grupposo and included topics such as recording track geometry
The hands-on training portion took place at the R
Corman Central Kentucky Lines' Lexington Yard
It included an engineering section with track notes & turnout inspection training and a mechanical portion with detailed instructions on car inspection
For more information about the AARS, please visit their website: American Association of Railroad Superintendents
Volume 13 - 2022 | https://doi.org/10.3389/fphys.2022.1029218
This article is part of the Research TopicNoncanonical Functions of Aminoacyl-tRNA SynthetasesView all 5 articles
The Aminoacyl-tRNA Synthetases (aaRSs) are an evolutionarily ancient family of enzymes that catalyze the esterification reaction linking a transfer RNA (tRNA) with its cognate amino acid matching the anticodon triplet of the tRNA
Proper functioning of the aaRSs to create aminoacylated (or “charged”) tRNAs is required for efficient and accurate protein synthesis
Beyond their basic canonical function in protein biosynthesis
aaRSs have a surprisingly diverse array of non-canonical functions that are actively being defined
The human genome contains 37 genes that encode unique aaRS proteins
56 human genetic diseases caused by damaging variants in aaRS genes have been described: 46 are autosomal recessive biallelic disorders and 10 are autosomal dominant monoallelic disorders
Our appreciation of human diseases caused by damaging genetic variants in the aaRSs has been greatly accelerated by the advent of next-generation sequencing
with 89% of these gene discoveries made since 2010
In addition to these genetic disorders of the aaRSs
anti-synthetase syndrome (ASSD) is a rare autoimmune inflammatory myopathy that involves the production of autoantibodies that disrupt aaRS proteins
This review provides an overview of the basic biology of aaRS proteins and describes the rapidly growing list of human diseases known to be caused by genetic variants or autoimmune targeting that affect both the canonical and non-canonical functions of these essential proteins
emerging during the time of the last universal common ancestor (LUCA)
and are distributed across all branches of life
Given their central role in human biology, it is unsurprising that genetic variants that disrupt aaRS protein structure and function cause disease. Damaging variants in aaRSs have now been linked to over 50 human diseases (Figure 1A)
Notably 2/3 of these newly recognized diseases have only been described in the past decade since next-generation sequencing technologies have become more widely available
This review will provide an overview of the basic biology of aaRS proteins and will describe the rapidly growing list of human diseases known to be caused by variants that affect both the canonical and non-canonical functions of these essential proteins
We anticipate this review will be of value to clinicians who care for patients with diseases related to aaRS function
and scientists interested in the links between the aaRSs and disease
(A) The timeline of discovery of biallelic and monoallelic human diseases caused by damaging aaRS variants since 2000
(B) Overview of the esterification reaction
that charges a tRNA molecule with its cognate amino acid
This charged tRNA then travels to a translating ribosome where it recognizes a codon and adds its amino acid to the growing polypeptide chain
(C) General characterization of symptoms associated with diseases caused by monoallelic and biallelic pathogenic aaRS variants
Diseases caused by monoallelic variants are typically late-onset
The synthesis of functional proteins relies on the accurate transfer of genetic information from DNA
DNA is first transcribed to mRNA using the complementarity of nucleotide bases
The mRNA is then translated into a protein by the ribosome
The ribosome reads the mRNA in groups of triplet codons with each codon corresponding to one amino acid
elongation factors bring a tRNA containing the three bases complementary to a codon (anticodon) and charged with the correct amino acid
The amino acid delivered by the tRNA is then added to the growing polypeptide chain following the order of codons specified by the mRNA
This elongating polypeptide eventually becomes a functional protein within the cell
all living organisms contain genes for the 20 aaRSs
The degeneracy of the genetic code means that there are more codons than amino acids
the aaRS for an amino acid can recognize several tRNAs cognate to that amino acid
Eukaryotes contain genes for cytoplasmic and mitochondrial aaRSs (and in plants
All of these proteins are nuclear encoded and synthesized in the cytoplasm with the organellar aaRSs being imported to their final destinations following translation
Our understanding of these non-canonical functions of aaRSs is growing rapidly. As we try to understand how pathogenic genetic changes in the aaRS genes cause human disease, it is essential that we look beyond the canonical aminoacylation role of aaRSs and consider how alterations in non-canonical functions may also contribute to pathophysiology (Guo et al., 2010b)
The naming convention for genes encoding aaRSs is as follows: 1) gene names begin with the one-letter symbol for the amino acid the aaRS recognizes (e.g.
A for alanine; Y for tyrosine); 2) this is followed by ARS1 or ARS2 depending on whether the aaRS is located in the cytoplasm or mitochondria
which charges a tRNA molecule with leucine in the mitochondria of the cell
While the single-letter amino acid code is used for aaRS gene names
the 3-letter amino acid code is generally used as a prefix to refer to the protein product
In total, human cells contain 37 genes that encode unique aaRS proteins. Of these, 18 encode cytoplasmic aaRSs (2 of these genes encode cytoplasmic PheRS), 17 encode mitochondrial synthetases, and two genes encode proteins that will exist in both locations (Wei et al., 2019)
TABLE 1. Complete list of each aaRS-encoding gene and every human disease in the Online Mendelian Inheritance in Man resource (OMIM - https://www.omim.org) caused by damaging monoallelic and biallelic variants in that gene
To date, 10 monoallelic diseases arising from autosomal dominant variants in seven aaRS genes (NARS1, HARS1, GARS1, AARS1, MARS1, WARS1, YARS1) have been identified (see Table 1)
all of these monoallelic conditions occur in cytoplasmic AARS-encoding genes
CMT is divided into various subtypes, with demyelinating Type 1 CMT (CMT1) and axonal Type 2 CMT (CMT2) containing the majority of cases. Demyelinating Type 1 CMT occurs from breakdown of the myelin sheath of nerves, while Type 2 axonal CMT occurs from direct damage to the axons of nerves (Harding and Thomas, 1980; Bird, 1993; Teunissen et al., 2003)
Intermediate CMT has features of both Type 1 and Type 2
While over 90 genes have been linked to the pathogenesis of CMT, aaRS-encoding genes constitute the largest gene family connected with this disorder (Bansagi et al., 2015; Blocquel et al., 2019)
variants in seven cytoplasmic aaRS genes have been established to cause CMT (YARS1
All of these genes except YARS1 and KARS1 are associated with monoallelic axonal CMT (CMT2)
KARS1 is an outlier in that it causes autosomal recessive CMT
and specifically the intermediate B subtype
In recent studies, a complementary pair of papers by Zuko et al. and Spaulding et al. expanded our understanding of disease mechanisms in CMT (Mellado and Willis, 2021; Spaulding et al., 2021; Zuko et al., 2021)
The investigators found that a disease causing GlyRS variant bound tRNAGly but failed to release it
This sequestration likely reduced the cellular tRNAGly pool
leading to insufficient tRNAGly supply to the ribosome
they observed ribosome stalling at glycine codons and chronic activation of the damaging integrated stress response (ISR) in affected motor neurons through the sensor kinase GCN2
these complementary studies identified two strategies with potential therapeutic benefit: 1) overexpression of tRNAGly to rescue protein synthesis
avoiding ISR activation and the ensuing peripheral neuropathy; or 2) inhibiting GCN2 to avoid activation of the neurotoxic ISR
the mechanism(s) linking aaRS variants to human CMT remains an area of intense investigation with the ultimate goal of developing treatments that will prevent neurodegeneration in patients born with aaRS variants that cause CMT
While CMT is the most common monoallelic condition associated with aaRS variants
several other related neurological conditions are caused by damaging aaRS variants
It is helpful to appreciate that borders between these disease definitions are rather ‘porous’ and that these additional monoallelic aaRS-related conditions share features with CMT and with each other
Distal hereditary motor neuronopathy (dHMN) is a pure motor neuropathy characterized by progressive distal muscle weakness and muscular atrophy without sensory impairment. Pathogenic variants in both WARS1 and GARS1 have been associated with dHMN (Antonellis et al., 2003; Tsai et al., 2017)
Neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities (designated NEDMILEG) is reported to be caused by de novo heterozygous variants in the NARS1 gene (Manole et al., 2020)
bi-allelic variants in NARS1 also cause a similar neurodevelopmental disease
The mechanism of disease for the de novo heterozygous variants was suggested to be toxic gain-of-function
while the bi-allelic recessive variants were thought to cause disease through partial loss-of-function
James type of infantile spinal muscular atrophy (SMAJI) is a severe neuromuscular disorder with symptoms beginning in the first weeks or months of life. Several unrelated children with SMAJI have been found to have de novo heterozygous variants in GARS1 (James et al., 2006; Eskuri et al., 2012; Forrester et al., 2020; Markovitz et al., 2020)
Biallelic diseases arising from the disruption of both alleles of genes encoding the aaRSs cause severe
early-onset disorders affecting multiple organ systems
Biallelic disease can be caused by homozygous or compound heterozygous variants
This amino acid supplementation was well-tolerated and safe
and showed encouraging results in terms of improvements in growth
and ability to cope with intercurrent infections
It is anticipated that this result will encourage more trials in additional patients to more formally assess the safety and efficacy of this treatment approach which targets the underlying aminoacylation defect in patients with autosomal recessive aaRS deficiencies
Biallelic aaRS diseases are multi-system disorders with significant cross-over between phenotypes. It is likely that more clarity will emerge around the clinical phenotypes as more patients and more genetic diagnoses are described. Indeed, Fuchs et al. emphasized the importance of deep phenotyping of patients with aaRS-related diseases and reporting all clinical features, so the full extent of the phenotypes can be appreciated (Fuchs et al., 2019)
For simplicity we have divided this section into biallelic disorders affecting mitochondrial or cytoplasmic aaRSs
There is clear cross-over between the manifestations of the disorders caused by biallelic mitochondrial and cytosolic aaRS variants which will only be resolved through the sequencing and careful phenotyping of more affected individuals
The recent rapid advances in defining the role of aaRSs in human disease opens many avenues for life changing improvements in diagnosis and targeted treatment
The ability to provide a complete genetic diagnosis for individuals with monoallelic or biallelic aaRS diseases is transformative in many ways—new treatments can be explored based on the genetic findings (i.e.
new potential medical issues or risks can be anticipated and avoided
and accurate genetic counselling can be provided for the patient and their extended family
our current understanding of aaRSs in health and disease represents a powerful integration of knowledge that has emerged through the study of evolutionary science
We acknowledge funding from the Pomona College Summer Undergraduate Research Program (to AT)
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Keywords: aminoacyl-tRNA synthetases (aaRSs)
Horvath GA and Cavalcanti ARO (2022) Aminoacyl-tRNA synthetases in human health and disease
Received: 26 August 2022; Accepted: 04 October 2022;Published: 18 October 2022
Copyright © 2022 Turvey, Horvath and Cavalcanti. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use
*Correspondence: Alexandra K. Turvey, YXRhYjIwMjBAbXltYWlsLnBvbW9uYS5lZHU=
The American Acne and Rosacea Society (AARS) has published a guideline update on the management of rosacea, with new recommendations focused on emerging rosacea therapeutic agents and formulations
The update was published in a recent edition of the Journal of Clinical and Aesthetic Dermatology
Summary of Rosacea Guidance: Updates on New Agents
published guidelines for rosacea typically recommend proper skin care
and avoidance of triggers as the cornerstones of prevention
But new evidence supporting novel therapeutic agents has emerged since previous guidance statements
Below is a summary of the new AARS recommendations regarding new and established agents based on rosacea presentation
Persistent Central Facial Erythema Without Papulopustular Lesions
Patients with rosacea presenting with persistent central facial erythema without papulopustular lesions may do well with a topical alpha-agonist therapy
Studies cited in the guideline suggest topical brimonidine and oxymetazoline improve diffuse facial erythema and produce a better facial appearance compared with devices alone
the AARS recommends intense pulsed light (IPL)
potassium titanyl phosphate (KTP) crystal laser
or pulsed dye laser as adjunct or alternative therapies for persistent central facial erythema without papulopustular lesions
Comments made by the guideline committee indicate the need for more data on the optimal use of device therapies in combination with alpha-agonist therapies in these patients
Diffuse Central Facial Erythema With Papulopustular Lesions
For cases of diffuse central facial erythema with papulopustular lesions
the AARS recommends several topical and oral therapies
The guideline cites research that demonstrates the successful use of 1% oxymetazoline cream for reducing persistent facial erythema and perilesional erythema in combination with topical metronidazole
In patients with severe papulopustular rosacea
subantibiotic dose doxycycline with azelaic acid may the preferred initial oral treatment due to the absence of bacterial selection pressure
the guideline update recommends oral azithromycin as an alternative approach if oral tetracycline is deemed ineffective or is poorly tolerated by the patient
Clinicians should counsel patients on the potential cardiac risks for tetracycline
especially if they have cardiovascular risk factors
clinicians may wish to start oral isotretinoin and then transition to intermittent therapy after initial control of the disease
Additional alternative topical therapies mentioned in the guideline include sulfacetamide-sulfur, calcineurin inhibitors, retinoids, and permethrin. The guideline cautions that limited data are available on these agents. Other options that may be useful for erythema include IPL, KTP, and pulsed dye laser, but the data on their efficacy for papulopustular lesions is limited
In cases of acute or subacute intermittent vasodilation
the AARS emphasize the importance of prevention by avoiding known triggers such as sun exposure
There are currently limited data on the use of topical therapies to treat flushing
the AARS recommends the use of low-dose oral agents that feature vasoconstrictive properties
The guideline update cites research suggesting intradermal botulinum toxin could be helpful for flushing
but limited data preclude a consensus-based recommendation for its use
the AARS guideline update points to data from small preliminary studies supporting the efficacy of niacinamide
and parthenolide-free extracts of feverfew for improving facial redness and flushing in rosacea
Evidence-based treatment for granulomatous rosacea
The evidence supporting these treatments is from small studies and case reports
there is no standard treatment for granulomatous rosacea
Recent evidence supports the use of carbon dioxide laser
erbium-doped yttrium aluminum garnet (YAG) laser
and dermabrasion as potential treatment options for phymatous rosacea
Selection of treatment depends on the stage of disease development
The AARS guideline suggests oral isotretinoin may improve early soft phymatous changes caused by sebaceous hyperplasia
The AARS notes in the guideline that there is little data to dictate the optimal use of combination strategies for rosacea
the guideline states that the current evidence suggests that it “appears that rationally selected medical therapies can be utilized concurrently” in patients with rosacea
Disclosure: Several guideline authors declared affiliations with the pharmaceutical industry
Please see the original reference for a full list of authors’ disclosures
Del Rosso JQ, Tanghetti E, Webster G, Stein Gold L, Thiboutot D, Gallo RL. Update on the management of rosacea from the American Acne & Rosacea Society (AARS). J Clin Aesthet Dermatol
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the clock is ticking on how long they can survive
This mother polar bear and her two cubs are headed down to the sea ice in the Svalbard archipelago
guides Timo Virma Virta Santucci and Teemu Tissari led a group of visitors out onto the sea ice
They had just crossed the island of Spitsbergen in the Svalbard archipelago
located about halfway between Norway and the North Pole
when they spotted a mother polar bear and her two cubs
because they need the sea ice to hunt seals — their primary prey
They also need it to walk to their denning areas
But animals don’t always respond predictably to shifting living conditions
and the polar bears of Svalbard have been resilient — at least for now
this is a good hunting ground,” Tissari said
studies the Barents Sea polar bear population
made up of about 3,000 bears around Svalbard and Russia
About 10% of them stay mostly on the land on and near Svalbard
Aars said the sea ice in this area is declining more than twice as fast as anywhere else in the Arctic
But the polar bears here — unexpectedly — are thriving
“One explanation is that they were hunted quite extensively until they were protected in 1973,” Aars said
“So … they are still in sort of a recovery phase.”
The other reason lies within the bears themselves
“Polar bears are what you call ‘plastic,’” Aars said
“They are already designed in a way that makes it possible for them to switch the way they live.”
The polar bears that live on Svalbard appear to be hunting more reindeer and taking more birds’ eggs
Mother bears are swimming farther to get to their denning areas
you use only a fraction of the energy that you would use if you swim the same 100 kilometers in cold water,” Aars explained
And while eating reindeer may be a good survival technique
which provide thick blubber that can sustain a polar bear for months
While these polar bears have proven to be resilient as the sea ice continues to melt
scientists do not believe they’ll be able to keep it up
I think polar bears would have expanded into areas where you don’t have sea ice already,” Aars said
history may be the best predictor of the future
“If we go back about 10- or 11,000 years ago
Now he’s a professor at the University of Alberta
and works mostly with polar bears in Canada
If these creatures were capable of adapting to land
“We would see them in southern Alaska along the panhandle,” he said
Tissari is used to seeing the earth — and the ice — beneath him change
“It feels like we’re witnessing something very dramatic here,” Tissari said
“This place will not be the same 20 years from now.”
Santucci used to work as a guide in Finland
and he traveled north to work for Svalbard Adventures
“We’re going toward something that we’re not controlling,” he said
And we kind of know that within the next 50 years
So then,you feel that you’re doing something wrong.”
That April polar bear sighting was Santucci’s first of the season
He knew the visitors who experienced it had glimpsed something special
It remains unclear exactly how Svalbard will change over the coming decades
but it will likely lose its 300 land-loving polar bears
“The fact that polar bears in Svalbard that are local never seem to move might indicate that that part of the population that is in Svalbard will just die off if sea ice disappeared for the whole year,” Aars said
That doesn’t mean polar bears will disappear completely
“I’m optimistic that in the very high reaches of the Arctic
we’ll be able to keep the bears in those areas,” Derocher said
the sea ice in the highest Arctic is too thick for polar bears
“It looks like there still will be enough sea ice for them to persist,” Derocher said
so that we can have those bears there in 50 or 100 years from now.”
the harder it will be to catch a glimpse of them
For those hoping to experience the magic of seeing a polar bear for themselves
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Structural Biology is the study of the 3D arrangements of atoms in biological molecules
It is an immensely rich source of information that has continually transformed how we think of ourselves
Knowing a structure adds a new level of reality to an entire range of mechanistic models
The double helical structure of DNA likely brought the most fundamental overhaul of our perspective
It showed that units we had called “genes” have a structure that makes the idea of a “heritable blueprint” unmistakably self-explanatory
Dennis Noble argues in a review of Phillip Ball’s new book
(2) Understanding that the reality is indeed much more interesting is crucial because of how it informs policy
One of the ways to see his argument is to recognize how much is missing from the blueprint metaphor
The essence of the metaphor is that blueprints must be read out
Reading genes out has two implications that tend to be ignored
it implies a reflexive symbolic translation from one chemical language to another
AARS distinguish between 20 kinds of amino acids and 61 kinds of transfer (t)RNAs
they form a chemical bond between them (Fig
(3) That bond cements the translation of the code by connecting amino acids to RNAs containing the right symbols (called “codons”)
The search for the origin of translation will succeed when we can describe the earliest AARS*tRNA “cognate pairs” and the rules by which the AARS recognized their two kinds of substrate
translation creates protein products that form the core networks that power the cell
often reflexive interactions between the elements of those networks
and regulatory proteins – amplify the functions of their genes by an immense factor
Our quest for how Nature assembled the first AARS•tRNA cognate pairs has tried to adhere to the tenet that two things must have been true of ancestral AARS
Experimental Biochemistry is the only means we have to assess functionality
Phylogenetics is the only record we have of what sequences might have survived a nearly random ancestry
The survival of those sequences and their ancestral functionality are clearly interdependent
Structural Biology played a key role in bringing us as far as we’ve come
My four previous segments (3,4,7,8) tell much of that story so far
1 to summarize where I think the field has come
Aligning the 3D atomic coordinates of all members of each AARS Class revealed that both superpositions show a sharp contrast between a common core
those highly variable surface loops are inserted into the same places within the cores
the core-loop junctions can be replaced by a single peptide bond
These aspects of AARS molecular anatomy pointed us directly at the structural cores
It was conceptually straightforward to construct genes for the cores themselves
and only moderately difficult to purify them and show that they retained most of the catalytic proficiency of their full-length (putative) descendants
That path has thus far given us four AARS urzymes
that exhibit more or less complementary amino acid specificities
we also discovered ways to tease out details of how ancestral AARS recognized their cognate RNA substrates by an operational code
(4) We related those specificities and the recognition of Class I and II amino acid substrates to projections of base- pairing between ancestral genes into the proteome
They only set the stage for the main tasks that remain to be taken on
The ultimate puzzle is how Nature built a set of protein decoders that could enforce the coding rules by which they
That task is outlined in the details in (Fig 1)
It entails genes written with an alphabet with as few as two distinct kinds of amino acids
The translated products of those genes had to fold into 3D structures whose catalytic apparatus
and RNA substrate recognition could then impose the coding rules required to read their own gene sequences
A critical missing piece is to strengthen the computer algorithms used to deduce ancestral sequences
(10,11) We analyze amino acid sequence alignments from many contemporary genes for positions where they differ and then estimate from the distributions of different side chains at those positions which amino acids the likely common ancestor used at that position
The biochemical tools we have developed should then provide the experimental platform to characterize those ancestral sequences
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The authors carried out a comprehensive search for alternative splice variants of 37 human aaRSs in brain tissues and in leukocytes
using gene-specific multiplex PCR of exon–exon junctions
They discovered hundreds of novel splice variants and
found that 60 of the 70 identified internal in-frame splice variants abrogated the highly conserved catalytic domain but retained at least one of the later-gained domains
These variants are therefore catalytic nulls in regard to the canonical function of aaRSs
but they may have other biological functions
the observed loss of specific exons could potentially lead to extensive structural changes and thus create new protein interactions
Human tRNA synthetase catalytic nulls with diverse functions
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By Penny Sarchet
(Image: © Samuel Blanc / www.sblanc.com)
They’re two of the world’s most loved animals – but there’s little love between them
Jon Aars of the Norwegian Polar Institute and his colleagues have made the first ever observations of polar bears eating white-beaked dolphins that had ventured too far north – in fact
they saw this happen several times last year
The first incident was in late April 2014. Collecting data in Svalbard, Norway
Aars’s team stumbled across a bear with two dead white-beaked dolphins
a species no one had ever seen the bears preying upon before
[using] a similar technique as killing seals,” says Aars
He thinks it probably caught the two dolphins when
they found a small hole and surfaced for air
had already eaten most of the first dolphin but couldn’t finish all of its catch in one sitting
storing a second dolphin – still largely intact – under the snow for a later snack
(Image: Jon Aars/Norwegian Polar Institute)
Hiding leftover food is a rare behaviour in polar bears
“We think he caught the second dolphin because he could
and then had extra food later,” says Aars
the team came across at least five other polar bears feeding on dead dolphins in the same area
“We were surprised as dolphins have not been reported in that area before,” says Aars
The explanation could be that the Svalbard waters were unusually warm at the time
and that a pod of dolphins had become trapped there when strong northerly winds had pushed them out of open water and in among the ice
Ian Stirling of the University of Alberta in Canada is not surprised that the bears decided to feast on dolphin meat: polar bears are known to be opportunistic predators
and have been recorded eating many different animals
“They will eat any marine mammal given a chance,” he says
“The bigger surprise was that the dolphins were entrapped before they could migrate south for the winter.”
Stirling believes the sight of polar bears tucking into weird meals could become more common
Polar bears are “willing to take and use anything possible when available”
Journal reference: Polar Research, DOI: 10.3402/polar.v34.26612
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Do you remember the fire when everything went perfect
The one where you wouldn’t do a single thing differently if you had the chance to do it over again
Structural firefighting operations and various other types of complex and dynamic emergency incidents are rarely completed in a manner that eliminates any room for improvement
There really are no “perfect fires.” That’s not a bad thing
and it’s certainly not an indictment on our industry’s skill level or dedication
It simply means that getting everything exactly right
in the exceedingly dynamic environment in which we operate is just a really tough task
One of the most productive opportunities we have as a fire service is to remain humble and self-reflective following significant incidents
We should certainly celebrate the positive outcomes and acknowledge the smart choices that were made in a high-stress
But we’re doing no one any good if we gloss over or ignore the minor (sometimes even major) tactical operations that could have been handled in a safer or more efficient manner
Departments that regularly conduct after-action reviews (AAR) are well-positioned to streamline their performance on emergency incidents and increase their margin of operational safety
The format in which these reviews are performed
varies widely from department to department
some organizations don’t engage in the AAR process at all
FireRescue1 surveyed thousands of firefighters from across the country for the inaugural “What Firefighters Want” survey
and the results surrounding AAR were surprising
One-third of respondents noted that AAR are conducted in their organizations rarely or never
And while it’s possible that some of the survey respondents may not perform reviews often due to a low volume of incidents
the more likely scenario is that many departments simply don’t buy in to the critical nature of the AAR concept
This theory is supported by the many survey respondents who called for more AARs
Here’s a snapshot of some of the 100+ AAR-focused responses:
If your department needs help focusing on AARs
An after-action review can encompass any type of post-incident reflection
that objectively evaluates performance and results in a plan for improvement
Even complex training events can sometimes elicit an AAR
although most revolve around incident mitigation
An effective way to get the AAR concept off the ground is to look around and see what other departments are doing
Most departments that regularly conduct AAR will have some type of policy that prescribes what level of detail and formality is required for various categories of incidents
such as automatic fire alarm activations or BLS medical responses
etc.) or ALS medical incident may simply elicit some conversation amongst the crew on the way back from the incident about what went smoothly and if any notable safety concerns were observed by any crewmembers
A working structure fire may trigger a post-incident “tailboard chat” among the incident commander and the company officers before everyone begins to pick up to leave
these quick talks can reinforce expectations
make note of the efficiency of various tactical operations
and provide an opportunity for the less-experienced officers to ask questions and get feedback
civilian fire fatalities or a mayday event should prompt a formal AAR process
a committee may be formed to investigate the incident operations and provide a formal report with recommendations
In the event of a catastrophic firefighter injury or a confirmed line-of-duty death (LODD)
ICs and senior staff members need to remain cognizant of the need to preserve the scene for comprehensive investigative procedures
and various state and federal agencies are all likely to have a need to assess the scene in the hours and days following such an event
Some fire departments have produced extraordinarily detailed and comprehensive internal reports following a serious injury or LODD in their organization
A best practice for these expansive investigative documents is to establish a cross-sectional committee that involves senior internal leadership
external non-biased subject-matter experts
and representatives from other interest groups
such as volunteer associations or dispatch
The issue of photography and/or videography by departmental personnel on an active scene has been a frequently debated topic in the fire service
record-keeping and logistics will all be determining factors in whether a department allows such activity
there is no denying that helmet camera or dash camera footage from an active fireground is invaluable for training and AAR purposes
particularly when paired with incident audio recordings
can provide a vivid picture of tactical operations that serves as context for myriad uses within the department and community
Some departments have taken an aggressive approach to “telling their story” on social media and other public forums to notable success and positive feedback
that cameras capture both the good and the bad
and departments must be cognizant of laws on record keeping and retention
informal discussions all the way to comprehensive reports produced by large committees
the key is to establish a culture of self-reflection and self-improvement within the organization
It may be an informal discussion amongst the crew on the way back from an incident or an afternoon spent quietly studying an investigation report for an LODD
as well as vicariously learning from others
is a healthy part of any organizational culture
Brad French is a captain in the Dayton (Ohio) Fire Department
He is a 20-year member of the fire service
and holds degrees in fire science and fire administration
French is a former member of the Board of Directors for the International Society of Fire Service Instructors (ISFSI)
serves on the technical committees for NFPA 1700 and 1402
and is a member of the technical panel for the UL-FSRI Coordinated Fire Attack study
Copyright © 2025 Lexipol. All rights reserved.Do Not Sell My Personal Information
Christian Aars puts the universe into perspective with images from the James Webb Space Telescope during a presentation at Our Savior’s Lutheran Church at Norse
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These corporate claims were filed with the B.C
Information is derived from notices of civil claim
Civil claims have not been tested or proven in court.
and Aars Shiddheek also known as Aars Shiddeek also known as Aar Aboobucker Shiddheek also known as Aar Subuhan Shiddheek
$470,788 and $159,885 and $744 to cover loans to Access Superior Mechanical that were guaranteed by Shiddheek
$428,984 and $24,975 to cover loans to the numbered companies that were guaranteed by Shiddheek
Damages for breach of agreement and breach of the duty of confidence after the defendant
downloaded confidential information on the plaintiff’s contractors
staff and customers before launching a competing business
$132,000 to repay a loan from the shareholder plaintiffs to the defendant
continue with an agreement with the plaintiff to honour its one-half interest in a property the defendant was also a tenant of
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The new insights arose from analysis of a mutant mouse strain
which earned the name sticky (Sti) because of its dishevelled fur
Sti mice suffer from slow progressive degeneration of cerebellar Purkinje cells
leading to motor defects reminiscent of many neurodegenerative conditions
Ackerman and colleagues therefore set out to determine the genetic defect underlying this neurodegeneration
The authors pinned down the mutation to the alanyl-tRNA synthetase (Aars) gene
the amino acid alanine to appropriate tRNA (tRNAAla) molecules and is crucial for the translation of mRNA transcripts into accurate peptide sequences
The mutation affects the editing domain of AARS
which deacylates tRNAAlamolecules that are mistakenly bound to similarly sized but inappropriate amino acids
the mutation reduced the ability of the enzyme to deacylate serine–tRNAAla molecules
whereas the capacity to recognize alanine and catalyse appropriate aminoacylation reactions was unaffected
Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration
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scientists have noticed something disturbing: polar bears are catching and eating white-beaked dolphins that have ventured too far north
While polar bears eating cute aquatic mammals is nothing new
the fact that the two species have crossed path raises some red flags
The first observation of this encounter happened in April 2014. Jon Aars of the Norwegian Polar Institute was collecting data in Svalbard
Norway when he stumbled upon a bear with two dolphin carcasses
Aars and his colleagues had never seen this sort of encounter before
"We were surprised as dolphins have not been reported in that area before," Aars told NewScientist
The polar bear likely caught these rogue dolphins similar to how it catches seals: Dolphins periodically surface in holes in the ice in order to breathe
which means a patient bear could sit and wait for the right moment to snatch its prey
the frugal bear stores the rest of its kill in the ice for later
Since this first sighting, at least five more bears have added dolphin to their menus
This disturbing trend is likely the result of global warming
Scientists believe the dolphins ventured north earlier than usual due to unseasonably warm weather
and were then blown off-course and stuck in polar bear country
As a group of scientists explained in Polar Research
"We suggest they were trapped in the ice after strong northerly winds the days before
and possibly killed when forced to surface for air at a small opening in the ice."
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Mental Floss may receive a commission for purchases made through these links.",{"type":"6a","value":"fr"},"AR_1",{"type":"6a","value":"ft"},"This article contains affiliate links to products selected by our editors
as well as products provided to Mental Floss for review purposes
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The first observation of this encounter happened in April 2014. Jon Aars of the Norwegian Polar Institute was collecting data in Svalbard
"We were surprised as dolphins have not been reported in that area before," Aars told NewScientist
Since this first sighting, at least five more bears have added dolphin to their menus
As a group of scientists explained in Polar Research